Phylogeny of the cuttlefishes (Mollusca: Cephalopoda) based on mitochondrial COI and 16S rRNA gene sequence data   总被引：5，自引：0，他引：5  

LIN Xiangzhi  ZHENG Xiaodong  XIAO Shu  WANG Rucai 《海洋学报(英文版)》2004,23(4):699-707

To clarify cuttlefish phylogeny, mitochondrial cytochrome c oxidase subunit I (COI) gene and partial 16S rRNA gene are sequenced for 13 cephalopod species. Phylogenetic trees are constructed, with the neighbor-joining method. Coleoids are divided into two main lineages, Decabrachia and Octobrachia. The monophyly of the order Sepioidea, which includes the families Sepiidae, Sepiolidae and Idiosepiidae, is not supported. From the two families of Sepioidea examined, the Sepiolidae are polyphyletic and are excluded from the order. On the basis of 16S rRNA and amino acid of COI gene sequences data, the two genera (Sepiella and Sepia) from the Sepiidae can be distinguished, but do not have a visible boundary using COI gene sequences. The reason is explained. This suggests that the 16S rDNA of cephalopods is a precious tool to analyze taxonomic relationships at the genus level, and COI gene is fitter at a higher taxonomic level (i.e., family).  相似文献   

Contrasting genetic diversity with phenotypic diversity in coloration and size in Xantho poressa (Brachyura: Xanthidae), with new results on its ecology     

Silke Reuschel  & Christoph D. Schubart 《Marine Ecology》2007,28(2):296-305

The ecology of Xantho poressa (Olivi, 1792) (Brachyura) was studied during field trips to the Mediterranean Sea, the Black Sea and the Spanish Atlantic Ocean. Our results reveal that X. poressa lives from the intertidal to the shallow subtidal zone, and inhabits relatively protected rocky shores, often with pebble underground, from juvenile to adult stages. A mark–recapture experiment revealed a high population density in this habitat. All stages, but predominantly juveniles, show a variability of colour patterns, which allow the crabs to blend in with the rocky substratum, thereby hiding from predators as passive defence. Adulthood can be reached with a carapace length smaller than 6 mm. The morphometric analysis of the species revealed allometric growth in carapace shape. Variability in overall size could be observed at different collecting sites. Neither the colour morphs nor the size differences could be attributed to differences of Cytochrome Oxidase subunit I mitochondrial DNA sequences, suggesting that ecological rather than genetic patterns are responsible for the different phenotypes.  相似文献   

12种石鲈科鱼类线粒体16S rRNA基因的部分序列分析   总被引：4，自引：0，他引：4  

任岗  章群  钱开诚  徐忠能  林小涛 《热带海洋学报》2007,26(3):48-52

分析了5属12种石鲈科鱼类的线粒体16S rRNA基因部分序列特征,并参照RNA二级结构模型区分配对区和非配对区。结果表明,配对区对G有偏好(33.5%),非配对区对A有偏好(38.5%);与配对区相比,非配对区存在更多的变异和系统发育信息。从序列的Jukes-Cantor遗传距离结果看,石鲈科胡椒鲷属Plectorhynchus、矶鲈属Parapristipoma、石鲈属Hapalogenys、髭鲷属Pomadasys、Haemulon属5个属属间的差异水平都接近或超过了其与外类群科间的差异水平。从构建的ME系统发育树结果看,石鲈科鱼类分成二大分支,未能形成单一类群。在亲缘关系上,胡椒鲷属和矶鲈属较近,石鲈属和Haemulon属较近,髭鲷属与其它4个属较远,髭鲷属在鲈亚目中的分类地位可能应提高到科的水平。初步确定研究中选用的16S rRNA基因片段基本适用于石鲈科属间和属内种间关系的研究。  相似文献   

mtDNA COI基因在轮虫分子系统重建中的意义   总被引：5，自引：0，他引：5  

董云伟  牛翠娟 《海洋湖沼通报》2004,(3):35-41

为分析mtDNA COI基因在轮虫分子系统重建中的作用．扩增并测定了B．calyciflorus和B．quadridentatus mtDNA COI基因部分序列。通过对扩增序列和Genbank中其它轮虫序列进行比较分析．发现COI序列包含丰富的遗传信息。利用Kimura双参数法计算遗传距离，在属和物种水平上间存在不同程度的遗传分化。利用NJ和MP法构建基因树。各物种形成独立进化枝．在属、科水平上与传统分类结果基本一致．这说明COI在轮虫系统重建中具有重要意义。在种内不同的单元型之间存在着遗传差异，部分种类不同地理种群之间存在较大的遗传变异．因此在系统重建过程中要注意种内多态的影响。  相似文献   

The invasive Asian green mussel Perna viridis in South Africa: all that is green is not viridis     

JM Micklem  CL Griffiths  N Ntuli  M Mwale 《African Journal of Marine Science》2016,38(2):207-215

The Asian green mussel Perna viridis is an invasive Indo-Pacific species recently reported from South African harbours. To verify the invasion, a phylogenetic (and morphological) analysis of green-shelled mussels (n = 39), found in six South African harbours, was conducted using the mitochondrial cytochrome c oxidase subunit I gene (COI). Estimates of genetic distances using the neighbour-joining analysis identified P. viridis only from Durban Harbour. All other green mussels were more than 3.2% divergent from P. viridis and were identified as green-shelled variants of indigenous P. perna. The only reliable morphological differences distinguishing the two species were the poorly developed mantle papillae and the wavy pallial line in P. viridis. The confirmed occurrence of P. viridis in a South African harbour suggests that there is a possible threat of the species becoming established and then spreading onto the open coast and competing with indigenous P. perna.  相似文献   

栉孔扇贝、虾夷扇贝及其杂交子代线粒体COI和Cytb基因遗传多样性分析          下载免费PDF全文

于涛  吴彪  杨爱国  周丽青  刘志鸿 《海洋科学》2016,40(3):1-9

为了解栉孔扇贝(Chlamys farreri)、虾夷扇贝(Patinopecten yessoensis)及其杂交子代(F1)的种群遗传多样性和遗传结构,对3个群体的线粒体COI和Cytb基因的部分序列进行了扩增和分析。经比对分别获得781bp和725bp核苷酸片段,74个样本共检测到47个单倍型;F1群体的单倍型数、单倍型多样性指数、核苷酸多样性及平均核苷酸差异数都是最高的,而双亲的较低;F1和栉孔扇贝间的遗传距离最小,其次为栉孔扇贝和虾夷扇贝群体之间,F1和虾夷扇贝群体之间的遗传距离最大;F1和栉孔扇贝之间的遗传分化系数较小而两者间的基因流比较大,F1和栉孔扇贝与虾夷扇贝之间的遗传分化系数较大而基因流较小,说明栉孔扇贝和虾夷扇贝群体群体很早就发生了遗传分化;采用UPGMA法和简化的中介网络法构建的系统树表明,3个群体的所有个体被分为2个族群,栉孔扇贝和F1交叉聚为一类,虾夷扇贝独自聚为一类,2个分支间没有交叉;使用特异性引物分别对3个群体进行PCR扩增检验,结果栉孔扇贝的特异引物能在杂交子代中扩增,而虾夷扇贝的特异引物不能在子代中扩增出条带,说明栉孔扇贝和虾夷扇贝杂交,其子代的线粒体遗传模式为严格的母系遗传。本研究结果表明杂种优势的形成与线粒体遗传多样性的变化有关。  相似文献   

Partial Sequence Analysis of Mitochondrial COI Gene of the Chinese Shrimp, Fenneropenaeus Chinensis   总被引：1，自引：0，他引：1  

GAO Tianxiang  LI Jian  WANG Qingyin  LIU JinxianThe Key Laboratory of Mariculture  Ministry of Education  Ocean University of China  Qingdao  P.R.ChinaYellow Sea Fisheries Research Institute  Chinese Academy of Fishery Sciences  Qingdao  P.R.China 《中国海洋大学学报(英文版)》2003,2(2)

Eight hundred and thirty eight base pair fragment of mitochondrial COI gene of wild and cultured populations (CP1, CP4, CP5 and CP6) of Fenneropenaeus chinensis was amplified and sequenced. The A, T, G and C contents of the sequence were 235bp (28.0% ),.307bp (36.6%), 138bp (16.5%) and 158bp (18.9%), respectively. Furthermore, 556bp fragment of the sequence was used to discuss the phylogenetic relationship among 14 Penaeidae species using Alpheus armillatus as the outgroup. From the molecular phylogenetic tree constructed by neighbor-joining method, we obtained three large shrimp groups: Farfantepenaeus, Litopenaeus and Fenneropenaeus group. The results also indicated that there were a closer genetic relationships between F. aztecus and F. paulensis, L. schmitti and L. setiferus, F. indicus and F. merguiensis, and the genus Farfantepenaeus was closer to Litopenaeus.  相似文献   

Structure of mitochondrial DNA control region of Pholis fangi and its phylogenetic implication     

Lin Li  Hui Zhang  Dianrong Sun  Tianxiang Gao 《中国海洋大学学报(英文版)》2014,13(3):491-496

In this study, the entire mitochondrial DNA （mtDNA） control region （CR） of Pholis fangi was amplified via polymerase chain reaction followed by direct sequencing. The length of the mtDNA CR consensus sequence of P. fangi was 853 bp in length. In accordance with the recognition sites as were previously reported in fish species, the mtDNA CR sequence of P. fangi can be divided into 3 domains, i.e., the extended terminal associated sequence （ETAS）, the central conserved sequence block （CSB）, and the CSB domain. In addition, the following structures were identified in the mtDNA CR sequence of P. fangi：2 ETASs in the ETAS domain （TAS and cTAS）, 6 CSBs in the central CSB domain （CSB-F to CSB-A）, and 3 CSBs in the CSB domain （CSB-1 to CSB-3）. These demonstrated that the structure of the mtDNA CR of P. fangi was substantially different from those of most other fish species. The mtDNA CR sequence of P. fangi contained one conserved region from 656 bp to 815 bp. Similar to most other fish species, P. fangi has no tandem repeat sequences in its mtDNA CR sequence. Phylogenetic analysis based on the complete mtDNA CR sequences showed that there were no genetic differences within P. fangi populations of the same geographical origin and between P. fangi populations of different geographical origins.  相似文献   

2种分子标记应用于澄黄滨珊瑚群体遗传多样性研究中的可行性     

田鹏  牛文涛  林荣澄  陈彬  Suharsono 《台湾海峡》2014,(1):46-52

利用PCR技术对澄黄滨珊瑚的2种分子标记（线粒体细胞色素氧化酶亚基1基因COI和核糖体RNA内转录间隔区基因ITS）进行测序,探讨COI序列和ITS序列在澄黄滨珊瑚（Porites lutea）群体研究中的适用性,并从中选出最适合研究澄黄滨珊瑚群体遗传多样性的分子标记．结果显示COI序列变异位点少,成对序列差异在群体内、群体间都很小,不适于澄黄滨珊瑚的群体研究;而ITS区序列个体内成对的序列差异仅为0．35％,可以作为研究澄黄滨珊瑚群体遗传多样性的分子标记;通过对ITS1、ITS2、5．8SrRNA、ITS1＋ITS2及ITS区序列的比较,认为ITS1＋ITS2序列是最适合研究澄黄滨珊瑚群体遗传多样性的分子标记．本研究为以后研究我国沿岸造礁石珊瑚澄黄滨珊瑚的群体遗传结构提供方法依据,从而为保护管理扣恢复受损珊瑚礁生态系统提供遗传学数据支持．  相似文献   

Benthodytes palauta,a new species of deep-sea holothuroid (Elasipodida: Psychropotidae) from the western Pacific Ocean     

Chuan Yu  Chunsheng Wang  Dongsheng Zhang  Ruiyan Zhang 《海洋学报(英文版)》2021,40(12):50-54

A new species of Psychropotidae holothuroid, Benthodytes palauta sp. nov., was collected from the Kyushu-Palau Ridge at a depth of 2666 m. This new species is characterized by a leathery body wall, red-violet skin, five pairs of dorsal papillae, nineteen pairs of tube feet, and a narrow brim. The internal organs include one Polian vesicle, two tufts of gonads, and no respiratory trees. Ventral ossicles are large and spinous, with crosses of four arms with central bipartite apophyses. Papillae ossicles are crosses with four arms with bipartite apophyses. The dorsal ossicles were few and large, and cross-shaped with four arms and central bipartite apophyses. Tentacle ossicles were large and rod-shaped or slender rods. Gonad ossicles were primary crosses of four arms and brim ossicles were cross-shaped with spines. The phylogenetic analyses of this species support that B. palauta sp. nov. belongs to Benthodytes. Furthermore, the paraphyletic relationships were confirmed; however, a revision of the genus Benthodytes is needed to resolve its phylogenetic relationship.  相似文献